PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_004386-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 352aa    MW: 40186.4 Da    PI: 6.9334
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_004386-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.72e-13157200755
                    HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    + Er+RR++i+s+++ Lr l+Pk      +K++ ++iL  A+eYI++Lq
  NNU_004386-RA 157 ITERNRRNKIKSKLFALRALVPKI-----TKMDRMSILGDAIEYIQELQ 200
                    68*********************7.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-15149212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.74E-12149204No hitNo description
PROSITE profilePS5088814.907150199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-13156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-11157200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.7E-16157211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MGQSNLFWEQ EAMIERNCTH KSLDEQMLSP AHDGDGYLHG DYLCFMSKHQ FGSVRPENDS  60
FHEGSSTGSI PSEEPQSFGS RSALGSRQMV ALMEQSDRIT TQDSLTESSV YREIGYNNCF  120
LIEQDMEIVS GHLMGGKDKL KACRRLGGEQ YQSKNLITER NRRNKIKSKL FALRALVPKI  180
TKMDRMSILG DAIEYIQELQ NNVKNLQDEL MCSQEKDESK SNIQLNIPNR RGGATEKIRR  240
QVHGTSCSSS TRENHDFSTV NDMGRQPMEV QVEVHQIDPN EFFVRLCCEH RRGWFRRLME  300
TMNSLGLQVT DVNVTTFKGM VLCNLKSTEV NHGELQAQHV KELLLKKICN PT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010251243.10.0PREDICTED: transcription factor ABORTED MICROSPORES-like isoform X1
RefseqXP_010251244.10.0PREDICTED: transcription factor ABORTED MICROSPORES-like isoform X1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.13e-43bHLH family protein